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p4rakernel · Frobenius Algebra · B₄ Logic

Paraconsistent Genetics

Animations illustrating the genetic code as a Frobenius algebra on the p4rakernel

Diagrams & Animations
01

B₄ Nucleotide Lattice

Belnap FOUR as the genetic nucleotide alphabet — the 4-valued distributive lattice underlying the genetic code. G (Both) at top, A (False) at bottom, C (True) and U (Neither) at intermediate positions.

B4 Nucleotide Lattice animation
02

Codon Box Stratification

The 16 codon boxes partitioned by the B₄ Frobenius rule. 8 exact boxes (μ∘δ=id holds exactly, 32 codons, p₃ carries no information) vs 8 split boxes (29 codons + 3 stops, μ∘δ=id modulo ℤ₂ wobble).

Codon Box Stratification animation
03

ENGAGR → FSPLIT → FFUSE Cycle

The paraconsistent kernel's Frobenius computation. Each codon undergoes the triple operation: ENGAGR (self-reference), FSPLIT (δ comultiplication), FFUSE (μ multiplication). The theorem ffuse∘fsplit = id IS the genetic code's μ∘δ=id.

ENGAGR FSPLIT FFUSE Cycle animation
04

The 20 Amino Acids: 8 Ground + 12 Promoted

Ground-layer AAs (Leu, Pro, Arg, Thr, Ala, Ser, Val, Gly) carry no primitive activation. 12 promoted AAs biject onto the 12 IG primitives (Ð, þ, Ř, Φ, ƒ, Ç, Γ, ɢ, ⊙, Ŧ, Σ, Ω), ordered by structural risk class.

20 Amino Acids animation
05

Stop Codons as Ω Winding Boundary

UAA (Ω₀ Ochre), UAG (Ωℤ₂ Amber), UGA (Ωℤ Opal) form the Frobenius algebra's topological boundary. Each carries a distinct Ω winding class, detected by the kernel as a paradox in the Frobenius condition.

Stop Codons Omega Winding Boundary animation
06

B₄ Lattice Mutation Paths

Amino acid substitutions analyzed as B₄ edit distances on the nucleotide lattice. Covering relations cost 1 (G→C, G→U, C→A, U→A). Cross-lattice jumps cost 2 (G↔A, C↔U). The Chimera Theorem governs composite edits across multiple primitive classes.

B4 Lattice Mutation Paths animation